老王vn2.2.

  • Assessing taxonomic metagenome profilers with OPAL
    publication
    Monday, March 4, 2024

    We introduce a framework to compare tools utilized to determine what microbes are present in a sample, and at what relative abundance. This will help computational biologists design better tools to analyze communities of microorganisms (which affect nearly everything in existence!).

  • MiCoP: Microbial Community Pro ling method for detecting viral and fungal organisms in metagenomic samples
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    Thursday, November 1, 2018

    We show that read mapping, along with a probabilistic assignment of multi-mapped reads, outperforms other computational approaches to identify the presence and relative amount of viral and fungal organisms in a metagenomic sample of microorganismal DNA.

  • The Biomedical Data Translator Program: Conception, Culture, and Community
    publication
    Friday, November 9, 2018

    A description of the NIH NCATS culture that emerged during the Translator project.

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  • Toward A Universal Biomedical Data Translator
    publication
    Friday, November 9, 2018

    The vision and high-level overview of the NIH National Center for Advancing Translational Science (NCATS) project entitled "Translator" (through which we have been funded). The goal of the project is essentially to build a biomedical "Siri": an automated platform for answering biomedical research questions that leverages repositories of publicly available information.

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  • Blood microbiome research featured in The Oregonian
    Article

    The Oregonian (a Portland-based newspaper) has featured our work in analyzing the blood microbiome of patients with and without mental disorders.

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老王vn2.2.

The Oregonian (a Portland-based newspaper) has featured our work in analyzing the blood microbiome of patients with and without mental disorders.

The feature can be found here: http://www.oregonlive.com/sponsor-content/?scid=135575&prx_t=chYEAmggrATQ4PA

  • Read more about Blood microbiome research featured in The Oregonian

老王vn2.2.

The Nature Translational Psychiatry paper has been picked up by a number of news outlets, including KTVZ (Oregon News Channel 21) and Reddit!

http://today.oregonstate.edu/news/schizophrenics%E2%80%99-blood-has-more-genetic-material-microbes

  • Read more about Nature paper picked up in news outlets

老王vn2.2.

Along with collaborators at UCLA, we were able to detect a small, but significant amount of microbes in blood This is surprising since it's typically assumed that the immune system typically removes any microbial presence from human blood. I used a reference-free microbial community algorithm, called EMDeBruijn, to help corroborate the patterns we saw which included an increase in microbial diversity in schizophrenia patients. EMDeBruijn is a metric based on the Wasserstein metric (aka the Earth Mover's Distance) and a de Bruijn graph induced by the k-mers in a metagenomic DNA sample.

  • Read more about Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia

老王vn2.2.

Submitted by koslickd on Tue, 05/01/2018 - 09:10

My recent work with the CAMI project was 51网络优化专家|513网络优化专家 V8.0.2.2 绿色版 下载 ...:2021-11-30 · 513网络优化专家是一款绿色免安装的网络优化加速软件，软件全面覆盖国内的所有网游，能够有效解决用户在游戏中遇到的延时高、登录慢、掉线频繁等问题，给您一个舒适、流畅的游戏环境。 51网络优化专家 特点： 1.绿色免安装 2.全面覆盖国内所有网游，能有效解决您在网游中遇到的延时高 .... The article summarizes the results of the most recent CAMI challenge in which performed a large scale comparison of metagenomic analysis tools (and discovered that many do not perform as well as advertised).

  • Read more about Featured article in OSU iMPACT

老王vn2.2.

I'm pleased to announce that we've recently been funded by the NIH National Center for Advancing Translational Sciences (NCATS) along with Steve Ramsey (Oregon State). Co-PI subawardees include Eric Deutsch (ISB), and Arnab Nandi (Ohio State).

Tags: 
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  • Read more about NIH NCATS grant award

老王vn2.2.

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